TY  - JOUR
AU  - Khanna, Narendra N
AU  - Singh, Manasvi
AU  - Maindarkar, Mahesh
AU  - Kumar, Ashish
AU  - Johri, Amer M.
AU  - Mentella, Laura
AU  - Laird, John R
AU  - Paraskevas, Kosmas I.
AU  - Ruzsa, Zoltan
AU  - Singh, Narpinder
AU  - Kalra, Mannudeep K.
AU  - Fernandes, Jose Fernandes E.
AU  - Chaturvedi, Seemant
AU  - Nicolaides, Andrew
AU  - Rathore, Vijay
AU  - Singh, Inder
AU  - Teji, Jagjit S.
AU  - Al-Maini, Mostafa
AU  - Isenović, Esma R.
AU  - Viswanathan, Vijay
AU  - Khanna, Puneet
AU  - Fouda, Mostafa M.
AU  - Saba, Luca
AU  - Suri, Jasjit S.
PY  - 2023
UR  - https://vinar.vin.bg.ac.rs/handle/123456789/12112
AB  - Cardiovascular disease (CVD) related mortality and morbidity heavily strain society. The relationship between external risk factors and our genetics have not been well established. It is widely acknowledged that environmental influence and individual behaviours play a significant role in CVD vulnerability, leading to the development of polygenic risk scores (PRS). We employed the PRISMA search method to locate pertinent research and literature to extensively review artificial intelligence (AI)-based PRS models for CVD risk prediction. Furthermore, we analyzed and compared conventional vs. AI-based solutions for PRS. We summarized the recent advances in our understanding of the use of AI-based PRS for risk prediction of CVD. Our study proposes three hypotheses: i) Multiple genetic variations and risk factors can be incorporated into AI-based PRS to improve the accuracy of CVD risk predicting. ii) AI-based PRS for CVD circumvents the drawbacks of conventional PRS calculators by incorporating a larger variety of genetic and non-genetic components, allowing for more precise and individualised risk estimations. iii) Using AI approaches, it is possible to significantly reduce the dimensionality of huge genomic datasets, resulting in more accurate and effective disease risk prediction models. Our study highlighted that the AI-PRS model outperformed traditional PRS calculators in predicting CVD risk. Furthermore, using AI-based methods to calculate PRS may increase the precision of risk predictions for CVD and have significant ramifications for individualized prevention and treatment plans.
T2  - Journal of Korean Medical Science
T1  - Polygenic Risk Score for Cardiovascular Diseases in Artificial Intelligence Paradigm: A Review
VL  - 38
IS  - 46
DO  - 10.3346/jkms.2023.38.e395
ER  - 

@article{
author = "Khanna, Narendra N and Singh, Manasvi and Maindarkar, Mahesh and Kumar, Ashish and Johri, Amer M. and Mentella, Laura and Laird, John R and Paraskevas, Kosmas I. and Ruzsa, Zoltan and Singh, Narpinder and Kalra, Mannudeep K. and Fernandes, Jose Fernandes E. and Chaturvedi, Seemant and Nicolaides, Andrew and Rathore, Vijay and Singh, Inder and Teji, Jagjit S. and Al-Maini, Mostafa and Isenović, Esma R. and Viswanathan, Vijay and Khanna, Puneet and Fouda, Mostafa M. and Saba, Luca and Suri, Jasjit S.",
year = "2023",
abstract = "Cardiovascular disease (CVD) related mortality and morbidity heavily strain society. The relationship between external risk factors and our genetics have not been well established. It is widely acknowledged that environmental influence and individual behaviours play a significant role in CVD vulnerability, leading to the development of polygenic risk scores (PRS). We employed the PRISMA search method to locate pertinent research and literature to extensively review artificial intelligence (AI)-based PRS models for CVD risk prediction. Furthermore, we analyzed and compared conventional vs. AI-based solutions for PRS. We summarized the recent advances in our understanding of the use of AI-based PRS for risk prediction of CVD. Our study proposes three hypotheses: i) Multiple genetic variations and risk factors can be incorporated into AI-based PRS to improve the accuracy of CVD risk predicting. ii) AI-based PRS for CVD circumvents the drawbacks of conventional PRS calculators by incorporating a larger variety of genetic and non-genetic components, allowing for more precise and individualised risk estimations. iii) Using AI approaches, it is possible to significantly reduce the dimensionality of huge genomic datasets, resulting in more accurate and effective disease risk prediction models. Our study highlighted that the AI-PRS model outperformed traditional PRS calculators in predicting CVD risk. Furthermore, using AI-based methods to calculate PRS may increase the precision of risk predictions for CVD and have significant ramifications for individualized prevention and treatment plans.",
journal = "Journal of Korean Medical Science",
title = "Polygenic Risk Score for Cardiovascular Diseases in Artificial Intelligence Paradigm: A Review",
volume = "38",
number = "46",
doi = "10.3346/jkms.2023.38.e395"
}

Khanna, N. N., Singh, M., Maindarkar, M., Kumar, A., Johri, A. M., Mentella, L., Laird, J. R., Paraskevas, K. I., Ruzsa, Z., Singh, N., Kalra, M. K., Fernandes, J. F. E., Chaturvedi, S., Nicolaides, A., Rathore, V., Singh, I., Teji, J. S., Al-Maini, M., Isenović, E. R., Viswanathan, V., Khanna, P., Fouda, M. M., Saba, L.,& Suri, J. S.. (2023). Polygenic Risk Score for Cardiovascular Diseases in Artificial Intelligence Paradigm: A Review. in Journal of Korean Medical Science, 38(46).
https://doi.org/10.3346/jkms.2023.38.e395

Khanna NN, Singh M, Maindarkar M, Kumar A, Johri AM, Mentella L, Laird JR, Paraskevas KI, Ruzsa Z, Singh N, Kalra MK, Fernandes JFE, Chaturvedi S, Nicolaides A, Rathore V, Singh I, Teji JS, Al-Maini M, Isenović ER, Viswanathan V, Khanna P, Fouda MM, Saba L, Suri JS. Polygenic Risk Score for Cardiovascular Diseases in Artificial Intelligence Paradigm: A Review. in Journal of Korean Medical Science. 2023;38(46).
doi:10.3346/jkms.2023.38.e395 .

Khanna, Narendra N, Singh, Manasvi, Maindarkar, Mahesh, Kumar, Ashish, Johri, Amer M., Mentella, Laura, Laird, John R, Paraskevas, Kosmas I., Ruzsa, Zoltan, Singh, Narpinder, Kalra, Mannudeep K., Fernandes, Jose Fernandes E., Chaturvedi, Seemant, Nicolaides, Andrew, Rathore, Vijay, Singh, Inder, Teji, Jagjit S., Al-Maini, Mostafa, Isenović, Esma R., Viswanathan, Vijay, Khanna, Puneet, Fouda, Mostafa M., Saba, Luca, Suri, Jasjit S., "Polygenic Risk Score for Cardiovascular Diseases in Artificial Intelligence Paradigm: A Review" in Journal of Korean Medical Science, 38, no. 46 (2023),
https://doi.org/10.3346/jkms.2023.38.e395 . .

TY  - JOUR
AU  - Saba, Luca
AU  - Maindarkar, Mahesh
AU  - Khanna, Narendra N.
AU  - Johri, Amer M.
AU  - Mantella, Laura
AU  - Laird, John R.
AU  - Paraskevas, Kosmas I.
AU  - Ruzsa, Zoltan
AU  - Kalra, Manudeep K.
AU  - Fernandes, Jose Fernandes E.
AU  - Chaturvedi, Seemant
AU  - Nicolaides, Andrew
AU  - Rathore, Vijay
AU  - Singh, Narpinder
AU  - Fouda, Mostafa M.
AU  - Isenović, Esma R.
AU  - Al-Maini, Mustafa
AU  - Viswanathan, Vijay
AU  - Suri, Jasjit S.
PY  - 2023
UR  - https://vinar.vin.bg.ac.rs/handle/123456789/12023
AB  - Background: Cardiovascular disease (CVD) is challenging to diagnose and treat since symptoms appear late during the progression of atherosclerosis. Conventional risk factors alone are not always sufficient to properly categorize at-risk patients, and clinical risk scores are inadequate in predicting cardiac events. Integrating genomic-based biomarkers (GBBM) found in plasma/serum samples with novel non-invasive radiomics-based biomarkers (RBBM) such as plaque area, plaque burden, and maximum plaque height can improve composite CVD risk prediction in the pharmaceutical paradigm. These biomarkers consider several pathways involved in the pathophysiology of atherosclerosis disease leading to CVD. Objective: This review proposes two hypotheses: (i) The composite biomarkers are strongly correlated and can be used to detect the severity of CVD/Stroke precisely, and (ii) an explainable artificial intelligence (XAI)-based composite risk CVD/Stroke model with survival analysis using deep learning (DL) can predict in preventive, precision, and personalized (aiP 3 ) framework benefiting the pharmaceutical paradigm. Method: The PRISMA search technique resulted in 214 studies assessing composite biomarkers using radiogenomics for CVD/Stroke. The study presents a XAI model using AtheroEdge TM  4.0 to determine the risk of CVD/Stroke in the pharmaceutical framework using the radiogenomics biomarkers. Conclusions: Our observations suggest that the composite CVD risk biomarkers using radiogenomics provide a new dimension to CVD/Stroke risk assessment. The proposed review suggests a unique, unbiased, and XAI model based on AtheroEdge TM  4.0 that can predict the composite risk of CVD/Stroke using radiogenomics in the pharmaceutical paradigm.
T2  - Frontiers in Bioscience-Landmark
T1  - A Pharmaceutical Paradigm for Cardiovascular Composite Risk Assessment Using Novel Radiogenomics Risk Predictors in Precision Explainable Artificial Intelligence Framework: Clinical Trial Tool
VL  - 28
IS  - 10
SP  - 248
DO  - 10.31083/j.fbl2810248
ER  - 

@article{
author = "Saba, Luca and Maindarkar, Mahesh and Khanna, Narendra N. and Johri, Amer M. and Mantella, Laura and Laird, John R. and Paraskevas, Kosmas I. and Ruzsa, Zoltan and Kalra, Manudeep K. and Fernandes, Jose Fernandes E. and Chaturvedi, Seemant and Nicolaides, Andrew and Rathore, Vijay and Singh, Narpinder and Fouda, Mostafa M. and Isenović, Esma R. and Al-Maini, Mustafa and Viswanathan, Vijay and Suri, Jasjit S.",
year = "2023",
abstract = "Background: Cardiovascular disease (CVD) is challenging to diagnose and treat since symptoms appear late during the progression of atherosclerosis. Conventional risk factors alone are not always sufficient to properly categorize at-risk patients, and clinical risk scores are inadequate in predicting cardiac events. Integrating genomic-based biomarkers (GBBM) found in plasma/serum samples with novel non-invasive radiomics-based biomarkers (RBBM) such as plaque area, plaque burden, and maximum plaque height can improve composite CVD risk prediction in the pharmaceutical paradigm. These biomarkers consider several pathways involved in the pathophysiology of atherosclerosis disease leading to CVD. Objective: This review proposes two hypotheses: (i) The composite biomarkers are strongly correlated and can be used to detect the severity of CVD/Stroke precisely, and (ii) an explainable artificial intelligence (XAI)-based composite risk CVD/Stroke model with survival analysis using deep learning (DL) can predict in preventive, precision, and personalized (aiP 3 ) framework benefiting the pharmaceutical paradigm. Method: The PRISMA search technique resulted in 214 studies assessing composite biomarkers using radiogenomics for CVD/Stroke. The study presents a XAI model using AtheroEdge TM  4.0 to determine the risk of CVD/Stroke in the pharmaceutical framework using the radiogenomics biomarkers. Conclusions: Our observations suggest that the composite CVD risk biomarkers using radiogenomics provide a new dimension to CVD/Stroke risk assessment. The proposed review suggests a unique, unbiased, and XAI model based on AtheroEdge TM  4.0 that can predict the composite risk of CVD/Stroke using radiogenomics in the pharmaceutical paradigm.",
journal = "Frontiers in Bioscience-Landmark",
title = "A Pharmaceutical Paradigm for Cardiovascular Composite Risk Assessment Using Novel Radiogenomics Risk Predictors in Precision Explainable Artificial Intelligence Framework: Clinical Trial Tool",
volume = "28",
number = "10",
pages = "248",
doi = "10.31083/j.fbl2810248"
}

Saba, L., Maindarkar, M., Khanna, N. N., Johri, A. M., Mantella, L., Laird, J. R., Paraskevas, K. I., Ruzsa, Z., Kalra, M. K., Fernandes, J. F. E., Chaturvedi, S., Nicolaides, A., Rathore, V., Singh, N., Fouda, M. M., Isenović, E. R., Al-Maini, M., Viswanathan, V.,& Suri, J. S.. (2023). A Pharmaceutical Paradigm for Cardiovascular Composite Risk Assessment Using Novel Radiogenomics Risk Predictors in Precision Explainable Artificial Intelligence Framework: Clinical Trial Tool. in Frontiers in Bioscience-Landmark, 28(10), 248.
https://doi.org/10.31083/j.fbl2810248

Saba L, Maindarkar M, Khanna NN, Johri AM, Mantella L, Laird JR, Paraskevas KI, Ruzsa Z, Kalra MK, Fernandes JFE, Chaturvedi S, Nicolaides A, Rathore V, Singh N, Fouda MM, Isenović ER, Al-Maini M, Viswanathan V, Suri JS. A Pharmaceutical Paradigm for Cardiovascular Composite Risk Assessment Using Novel Radiogenomics Risk Predictors in Precision Explainable Artificial Intelligence Framework: Clinical Trial Tool. in Frontiers in Bioscience-Landmark. 2023;28(10):248.
doi:10.31083/j.fbl2810248 .

Saba, Luca, Maindarkar, Mahesh, Khanna, Narendra N., Johri, Amer M., Mantella, Laura, Laird, John R., Paraskevas, Kosmas I., Ruzsa, Zoltan, Kalra, Manudeep K., Fernandes, Jose Fernandes E., Chaturvedi, Seemant, Nicolaides, Andrew, Rathore, Vijay, Singh, Narpinder, Fouda, Mostafa M., Isenović, Esma R., Al-Maini, Mustafa, Viswanathan, Vijay, Suri, Jasjit S., "A Pharmaceutical Paradigm for Cardiovascular Composite Risk Assessment Using Novel Radiogenomics Risk Predictors in Precision Explainable Artificial Intelligence Framework: Clinical Trial Tool" in Frontiers in Bioscience-Landmark, 28, no. 10 (2023):248,
https://doi.org/10.31083/j.fbl2810248 . .