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DisProt: intrinsic protein disorder annotation in 2020

Hatos, András; Hajdu-Soltész, Borbála; Monzon, Alexander M; Palopoli, Nicolas; Álvarez, Lucía; Aykac-Fas, Burcu; Bassot, Claudio; Benítez, Guillermo I; Bevilacqua, Martina; Chasapi, Anastasia; Chemes, Lucia; Davey, Norman E; Davidović, Radoslav S.; Dunker, A Keith; Elofsson, Arne; Gobeill, Julien; Foutel, Nicolás S González; Sudha, Govindarajan; Guharoy, Mainak; Horvath, Tamas; Iglesias, Valentin; Kajava, Andrey V; Kovacs, Orsolya P; Lamb, John; Lambrughi, Matteo; Lazar, Tamas; Leclercq, Jeremy Y; Leonardi, Emanuela; Macedo-Ribeiro, Sandra; Macossay-Castillo, Mauricio; Maiani, Emiliano; Manso, José A; Marino-Buslje, Cristina; Martínez-Pérez, Elizabeth; Mészáros, Bálint; Mičetić, Ivan; Minervini, Giovanni; Murvai, Nikoletta; Necci, Marco; Ouzounis, Christos A; Pajkos, Mátyás; Paladin, Lisanna; Pancsa, Rita; Papaleo, Elena; Parisi, Gustavo; Pasche, Emilie; Barbosa Pereira, Pedro J; Promponas, Vasilis J; Pujols, Jordi; Quaglia, Federica; Ruch, Patrick; Salvatore, Marco; Schad, Eva; Szabo, Beata; Szaniszló, Tamás; Tamana, Stella; Tantos, Agnes; Veljković, Nevena V.; Ventura, Salvador; Vranken, Wim; Dosztányi, Zsuzsanna; Tompa, Peter; Tosatto, Silvio C E; Piovesan, Damiano

(2019)

TY  - JOUR
AU  - Hatos, András
AU  - Hajdu-Soltész, Borbála
AU  - Monzon, Alexander M
AU  - Palopoli, Nicolas
AU  - Álvarez, Lucía
AU  - Aykac-Fas, Burcu
AU  - Bassot, Claudio
AU  - Benítez, Guillermo I
AU  - Bevilacqua, Martina
AU  - Chasapi, Anastasia
AU  - Chemes, Lucia
AU  - Davey, Norman E
AU  - Davidović, Radoslav S.
AU  - Dunker, A Keith
AU  - Elofsson, Arne
AU  - Gobeill, Julien
AU  - Foutel, Nicolás S González
AU  - Sudha, Govindarajan
AU  - Guharoy, Mainak
AU  - Horvath, Tamas
AU  - Iglesias, Valentin
AU  - Kajava, Andrey V
AU  - Kovacs, Orsolya P
AU  - Lamb, John
AU  - Lambrughi, Matteo
AU  - Lazar, Tamas
AU  - Leclercq, Jeremy Y
AU  - Leonardi, Emanuela
AU  - Macedo-Ribeiro, Sandra
AU  - Macossay-Castillo, Mauricio
AU  - Maiani, Emiliano
AU  - Manso, José A
AU  - Marino-Buslje, Cristina
AU  - Martínez-Pérez, Elizabeth
AU  - Mészáros, Bálint
AU  - Mičetić, Ivan
AU  - Minervini, Giovanni
AU  - Murvai, Nikoletta
AU  - Necci, Marco
AU  - Ouzounis, Christos A
AU  - Pajkos, Mátyás
AU  - Paladin, Lisanna
AU  - Pancsa, Rita
AU  - Papaleo, Elena
AU  - Parisi, Gustavo
AU  - Pasche, Emilie
AU  - Barbosa Pereira, Pedro J
AU  - Promponas, Vasilis J
AU  - Pujols, Jordi
AU  - Quaglia, Federica
AU  - Ruch, Patrick
AU  - Salvatore, Marco
AU  - Schad, Eva
AU  - Szabo, Beata
AU  - Szaniszló, Tamás
AU  - Tamana, Stella
AU  - Tantos, Agnes
AU  - Veljković, Nevena V.
AU  - Ventura, Salvador
AU  - Vranken, Wim
AU  - Dosztányi, Zsuzsanna
AU  - Tompa, Peter
AU  - Tosatto, Silvio C E
AU  - Piovesan, Damiano
PY  - 2019
UR  - https://vinar.vin.bg.ac.rs/handle/123456789/8799
AB  - The Database of Protein Disorder (DisProt, URL: https://disprot.org) provides manually curated annotations of intrinsically disordered proteins from the literature. Here we report recent developments with DisProt (version 8), including the doubling of protein entries, a new disorder ontology, improvements of the annotation format and a completely new website. The website includes a redesigned graphical interface, a better search engine, a clearer API for programmatic access and a new annotation interface that integrates text mining technologies. The new entry format provides a greater flexibility, simplifies maintenance and allows the capture of more information from the literature. The new disorder ontology has been formalized and made interoperable by adopting the OWL format, as well as its structure and term definitions have been improved. The new annotation interface has made the curation process faster and more effective. We recently showed that new DisProt annotations can be effectively used to train and validate disorder predictors. We believe the growth of DisProt will accelerate, contributing to the improvement of function and disorder predictors and therefore to illuminate the ‘dark’ proteome.
T2  - Nucleic Acids Research
T1  - DisProt: intrinsic protein disorder annotation in 2020
VL  - 48
IS  - D1
SP  - D269
EP  - D276
DO  - 10.1093/nar/gkz975
ER  - 
@article{
author = "Hatos, András and Hajdu-Soltész, Borbála and Monzon, Alexander M and Palopoli, Nicolas and Álvarez, Lucía and Aykac-Fas, Burcu and Bassot, Claudio and Benítez, Guillermo I and Bevilacqua, Martina and Chasapi, Anastasia and Chemes, Lucia and Davey, Norman E and Davidović, Radoslav S. and Dunker, A Keith and Elofsson, Arne and Gobeill, Julien and Foutel, Nicolás S González and Sudha, Govindarajan and Guharoy, Mainak and Horvath, Tamas and Iglesias, Valentin and Kajava, Andrey V and Kovacs, Orsolya P and Lamb, John and Lambrughi, Matteo and Lazar, Tamas and Leclercq, Jeremy Y and Leonardi, Emanuela and Macedo-Ribeiro, Sandra and Macossay-Castillo, Mauricio and Maiani, Emiliano and Manso, José A and Marino-Buslje, Cristina and Martínez-Pérez, Elizabeth and Mészáros, Bálint and Mičetić, Ivan and Minervini, Giovanni and Murvai, Nikoletta and Necci, Marco and Ouzounis, Christos A and Pajkos, Mátyás and Paladin, Lisanna and Pancsa, Rita and Papaleo, Elena and Parisi, Gustavo and Pasche, Emilie and Barbosa Pereira, Pedro J and Promponas, Vasilis J and Pujols, Jordi and Quaglia, Federica and Ruch, Patrick and Salvatore, Marco and Schad, Eva and Szabo, Beata and Szaniszló, Tamás and Tamana, Stella and Tantos, Agnes and Veljković, Nevena V. and Ventura, Salvador and Vranken, Wim and Dosztányi, Zsuzsanna and Tompa, Peter and Tosatto, Silvio C E and Piovesan, Damiano",
year = "2019",
url = "https://vinar.vin.bg.ac.rs/handle/123456789/8799",
abstract = "The Database of Protein Disorder (DisProt, URL: https://disprot.org) provides manually curated annotations of intrinsically disordered proteins from the literature. Here we report recent developments with DisProt (version 8), including the doubling of protein entries, a new disorder ontology, improvements of the annotation format and a completely new website. The website includes a redesigned graphical interface, a better search engine, a clearer API for programmatic access and a new annotation interface that integrates text mining technologies. The new entry format provides a greater flexibility, simplifies maintenance and allows the capture of more information from the literature. The new disorder ontology has been formalized and made interoperable by adopting the OWL format, as well as its structure and term definitions have been improved. The new annotation interface has made the curation process faster and more effective. We recently showed that new DisProt annotations can be effectively used to train and validate disorder predictors. We believe the growth of DisProt will accelerate, contributing to the improvement of function and disorder predictors and therefore to illuminate the ‘dark’ proteome.",
journal = "Nucleic Acids Research",
title = "DisProt: intrinsic protein disorder annotation in 2020",
volume = "48",
number = "D1",
pages = "D269-D276",
doi = "10.1093/nar/gkz975"
}
26
26
14
16

Tetravalent Metal Ion Guests in Polyoxopalladate Chemistry: Synthesis and Anticancer Activity of [MO 8 Pd 12 (PO 4 ) 8 ] 12– (M = Sn IV , Pb IV )

Yang, Peng; Ma, Tian; Lang, Zhongling; Misirlić-Denčić, Sonja; Isaković, Anđelka; Benyei, Attila; Čolović, Mirjana B.; Marković, Ivanka; Krstić, Danijela Z.; Poblet, Josep M.; Lin, Zhengguo; Kortz, Ulrich

(2019)

TY  - JOUR
AU  - Yang, Peng
AU  - Ma, Tian
AU  - Lang, Zhongling
AU  - Misirlić-Denčić, Sonja
AU  - Isaković, Anđelka
AU  - Benyei, Attila
AU  - Čolović, Mirjana B.
AU  - Marković, Ivanka
AU  - Krstić, Danijela Z.
AU  - Poblet, Josep M.
AU  - Lin, Zhengguo
AU  - Kortz, Ulrich
PY  - 2019
UR  - http://vinar.vin.bg.ac.rs/handle/123456789/8499
AB  - The first two examples of polyoxopalladates(II) (POPs) containing tetravalent metal ion guests, [MO8Pd12(PO4)8]12- (M = SnIV, PbIV), have been prepared and structurally characterized in the solid state, solution, and gas phase. The interactions of the metal ion guests and the palladium-oxo shell were studied by theoretical calculations. The POPs were shown to possess anticancer activity by causing oxidative stress inducing caspase activation and consecutive apoptosis of leukemic cells.
T2  - Inorganic Chemistry
T1  - Tetravalent Metal Ion Guests in Polyoxopalladate Chemistry: Synthesis and Anticancer Activity of [MO 8 Pd 12 (PO 4 ) 8 ] 12– (M = Sn IV , Pb IV )
VL  - 58
IS  - 17
SP  - 11294
EP  - 11299
DO  - 10.1021/acs.inorgchem.9b01129
ER  - 
@article{
author = "Yang, Peng and Ma, Tian and Lang, Zhongling and Misirlić-Denčić, Sonja and Isaković, Anđelka and Benyei, Attila and Čolović, Mirjana B. and Marković, Ivanka and Krstić, Danijela Z. and Poblet, Josep M. and Lin, Zhengguo and Kortz, Ulrich",
year = "2019",
url = "http://vinar.vin.bg.ac.rs/handle/123456789/8499",
abstract = "The first two examples of polyoxopalladates(II) (POPs) containing tetravalent metal ion guests, [MO8Pd12(PO4)8]12- (M = SnIV, PbIV), have been prepared and structurally characterized in the solid state, solution, and gas phase. The interactions of the metal ion guests and the palladium-oxo shell were studied by theoretical calculations. The POPs were shown to possess anticancer activity by causing oxidative stress inducing caspase activation and consecutive apoptosis of leukemic cells.",
journal = "Inorganic Chemistry",
title = "Tetravalent Metal Ion Guests in Polyoxopalladate Chemistry: Synthesis and Anticancer Activity of [MO 8 Pd 12 (PO 4 ) 8 ] 12– (M = Sn IV , Pb IV )",
volume = "58",
number = "17",
pages = "11294-11299",
doi = "10.1021/acs.inorgchem.9b01129"
}
2
3
3

Measurement of the t (t)over-bar production cross-section using e mu events with b-tagged jets in pp collisions at root s = 7 and 8 TeV with the ATLAS detector (vol 76, pg 642, 2014)

Aad, G.; Agatonović-Jovin, Tatjana; Ćirković, Predrag; Dimitrievska, A.; Krstić, Jelena; Mamužić, Judita; Marjanovic, M.; Popovic, D. S.; Sijacki, Dj.; Simic, Lj.; Vranjes, N.; Vranješ Milosavljević, Marija

(2016)

@misc{
author = "Aad, G. and Agatonović-Jovin, Tatjana and Ćirković, Predrag and Dimitrievska, A. and Krstić, Jelena and Mamužić, Judita and Marjanovic, M. and Popovic, D. S. and Sijacki, Dj. and Simic, Lj. and Vranjes, N. and Vranješ Milosavljević, Marija",
year = "2016",
url = "http://vinar.vin.bg.ac.rs/handle/123456789/1432",
journal = "European Physical Journal C. Particles and Fields",
title = "Measurement of the t (t)over-bar production cross-section using e mu events with b-tagged jets in pp collisions at root s = 7 and 8 TeV with the ATLAS detector (vol 76, pg 642, 2014)",
volume = "76",
number = "11",
doi = "10.1140/epjc/s10052-016-4501-2"
}
10
20

Measurement of the t(t)over-bar production cross-section as a function of jet multiplicity and jet transverse momentum in 7 TeV proton-proton collisions with the ATLAS detector

Aad, G.; Agatonović-Jovin, Tatjana; Ćirković, Predrag; Dimitrievska, A.; Krstić, Jelena; Mamužić, Judita; Marjanovic, M.; Popovic, D. S.; Sijacki, Dj.; Simic, Lj.; Vranjes, N.; Vranješ Milosavljević, Marija

(2015)

TY  - JOUR
AU  - Aad, G.
AU  - Agatonović-Jovin, Tatjana
AU  - Ćirković, Predrag
AU  - Dimitrievska, A.
AU  - Krstić, Jelena
AU  - Mamužić, Judita
AU  - Marjanovic, M.
AU  - Popovic, D. S.
AU  - Sijacki, Dj.
AU  - Simic, Lj.
AU  - Vranjes, N.
AU  - Vranješ Milosavljević, Marija
PY  - 2015
UR  - http://vinar.vin.bg.ac.rs/handle/123456789/362
AB  - The t (t) over bar production cross-section dependence on jet multiplicity and jet transverse momentum is reported for proton-proton collisions at a centre-of-mass energy of 7 TeV in the single-lepton channel. The data were collected with the ATLAS detector at the CERN Large Hadron Collider and comprise the full 2011 data sample corresponding to an integrated luminosity of 4.6 fb(-1). Differential cross-sections are presented as a function of the jet multiplicity for up to eight jets using jet transverse momentum thresholds of 25, 40, 60, and 80 GeV, and as a function of jet transverse momentum up to the fifth jet. The results are shown after background subtraction and corrections for all known detector effects, within a kinematic range closely matched to the experimental acceptance. Several QCD-based Monte Carlo models are compared with the results. Sensitivity to the parton shower modelling is found at the higher jet multiplicities, at high transverse momentum of the leading jet and in the transverse momentum spectrum of the fifth leading jet. The MC"NLO+HERWIG MC is found to predict too few events at higher jet multiplicities.
T2  - Journal of High Energy Physics
T1  - Measurement of the t(t)over-bar production cross-section as a function of jet multiplicity and jet transverse momentum in 7 TeV proton-proton collisions with the ATLAS detector
IS  - 1
SP  - 1
EP  - 67
DO  - 10.1007/JHEP01(2015)020
ER  - 
@article{
author = "Aad, G. and Agatonović-Jovin, Tatjana and Ćirković, Predrag and Dimitrievska, A. and Krstić, Jelena and Mamužić, Judita and Marjanovic, M. and Popovic, D. S. and Sijacki, Dj. and Simic, Lj. and Vranjes, N. and Vranješ Milosavljević, Marija",
year = "2015",
url = "http://vinar.vin.bg.ac.rs/handle/123456789/362",
abstract = "The t (t) over bar production cross-section dependence on jet multiplicity and jet transverse momentum is reported for proton-proton collisions at a centre-of-mass energy of 7 TeV in the single-lepton channel. The data were collected with the ATLAS detector at the CERN Large Hadron Collider and comprise the full 2011 data sample corresponding to an integrated luminosity of 4.6 fb(-1). Differential cross-sections are presented as a function of the jet multiplicity for up to eight jets using jet transverse momentum thresholds of 25, 40, 60, and 80 GeV, and as a function of jet transverse momentum up to the fifth jet. The results are shown after background subtraction and corrections for all known detector effects, within a kinematic range closely matched to the experimental acceptance. Several QCD-based Monte Carlo models are compared with the results. Sensitivity to the parton shower modelling is found at the higher jet multiplicities, at high transverse momentum of the leading jet and in the transverse momentum spectrum of the fifth leading jet. The MC"NLO+HERWIG MC is found to predict too few events at higher jet multiplicities.",
journal = "Journal of High Energy Physics",
title = "Measurement of the t(t)over-bar production cross-section as a function of jet multiplicity and jet transverse momentum in 7 TeV proton-proton collisions with the ATLAS detector",
number = "1",
pages = "1-67",
doi = "10.1007/JHEP01(2015)020"
}
3
15
19
19

Measurement of the mass difference between top and anti-top quarks in pp collisions at root s=7 TeV using the ATLAS detector

Aad, G.; Agatonović-Jovin, Tatjana; Božović-Jelisavčić, Ivanka; Ćirković, Predrag; Krstić, Jelena; Mamužić, Judita; Popovic, D. S.; Sijacki, Dj.; Simic, Lj.; Vranjes, N.; Vranješ Milosavljević, Marija; Zivkovic, L.

(2014)

TY  - JOUR
AU  - Aad, G.
AU  - Agatonović-Jovin, Tatjana
AU  - Božović-Jelisavčić, Ivanka
AU  - Ćirković, Predrag
AU  - Krstić, Jelena
AU  - Mamužić, Judita
AU  - Popovic, D. S.
AU  - Sijacki, Dj.
AU  - Simic, Lj.
AU  - Vranjes, N.
AU  - Vranješ Milosavljević, Marija
AU  - Zivkovic, L.
PY  - 2014
UR  - http://vinar.vin.bg.ac.rs/handle/123456789/5860
AB  - A measurement of the mass difference between top and anti-top quarks is presented. In a 4.7 fb(-1) data sample of proton-proton collisions at root s = 7 TeV recorded with the ATLAS detector at the LHC, events consistent with t (t) over bar production and decay into a single charged lepton final state are reconstructed. For each event, the mass difference between the top and anti-top quark candidate is calculated. A two b-tag requirement is used in order to reduce the background contribution. A maximum likelihood fit to these per-event mass differences yields Delta m = m(t) - m((t) over bar) = 0.67 +/- 0.61 (stat) +/- 0.41 (syst) GeV, consistent with CPT invariance. (C) 2013 The Authors. Published by Elsevier B.V. All rights reserved.
T2  - Physics Letters B
T1  - Measurement of the mass difference between top and anti-top quarks in pp collisions at root s=7 TeV using the ATLAS detector
VL  - 728
SP  - 363
EP  - 379
DO  - 10.1016/j.physletb.2013.12.010
ER  - 
@article{
author = "Aad, G. and Agatonović-Jovin, Tatjana and Božović-Jelisavčić, Ivanka and Ćirković, Predrag and Krstić, Jelena and Mamužić, Judita and Popovic, D. S. and Sijacki, Dj. and Simic, Lj. and Vranjes, N. and Vranješ Milosavljević, Marija and Zivkovic, L.",
year = "2014",
url = "http://vinar.vin.bg.ac.rs/handle/123456789/5860",
abstract = "A measurement of the mass difference between top and anti-top quarks is presented. In a 4.7 fb(-1) data sample of proton-proton collisions at root s = 7 TeV recorded with the ATLAS detector at the LHC, events consistent with t (t) over bar production and decay into a single charged lepton final state are reconstructed. For each event, the mass difference between the top and anti-top quark candidate is calculated. A two b-tag requirement is used in order to reduce the background contribution. A maximum likelihood fit to these per-event mass differences yields Delta m = m(t) - m((t) over bar) = 0.67 +/- 0.61 (stat) +/- 0.41 (syst) GeV, consistent with CPT invariance. (C) 2013 The Authors. Published by Elsevier B.V. All rights reserved.",
journal = "Physics Letters B",
title = "Measurement of the mass difference between top and anti-top quarks in pp collisions at root s=7 TeV using the ATLAS detector",
volume = "728",
pages = "363-379",
doi = "10.1016/j.physletb.2013.12.010"
}
2
9
9
13

Measurement of the production cross section of prompt j/psi mesons in association with a W (+/-) boson in pp collisions root s=7 TeV with the ATLAS detector

Aad, G.; Agatonović-Jovin, Tatjana; Božović-Jelisavčić, Ivanka; Ćirković, Predrag; Krstić, Jelena; Mamužić, Judita; Popovic, D. S.; Sijacki, Dj.; Simic, Lj.; Vranjes, N.; Vranješ Milosavljević, Marija

(2014)

TY  - JOUR
AU  - Aad, G.
AU  - Agatonović-Jovin, Tatjana
AU  - Božović-Jelisavčić, Ivanka
AU  - Ćirković, Predrag
AU  - Krstić, Jelena
AU  - Mamužić, Judita
AU  - Popovic, D. S.
AU  - Sijacki, Dj.
AU  - Simic, Lj.
AU  - Vranjes, N.
AU  - Vranješ Milosavljević, Marija
PY  - 2014
UR  - http://vinar.vin.bg.ac.rs/handle/123456789/5993
AB  - The process pp - GT W (+/-) J/psi provides a powerful probe of the production mechanism of charmonium in hadronic collisions, and is also sensitive to multiple parton interactions in the colliding protons. Using the 2011 ATLAS dataset of 4.5 fb(-1) of root s= 7 TeV pp collisions at the LHC, the first observation is made of the production of W (+/-) + prompt J/psi events in hadronic collisions, using W (+/-) - GT mu nu(mu) and J/psi - GT mu(+)mu(-) center dot A yield of W (+/-) + prompt J/psi events is observed, with a statistical significance of 5.1 sigma. The production rate as a ratio to the inclusive W (+/-) boson production rate is measured, and the double parton scattering contribution to the cross section is estimated.
T2  - Journal of High Energy Physics
T1  - Measurement of the production cross section of prompt j/psi mesons in association with a W (+/-) boson in pp collisions root s=7 TeV with the ATLAS detector
IS  - 4
DO  - 10.1007/JHEP04(2014)172
ER  - 
@article{
author = "Aad, G. and Agatonović-Jovin, Tatjana and Božović-Jelisavčić, Ivanka and Ćirković, Predrag and Krstić, Jelena and Mamužić, Judita and Popovic, D. S. and Sijacki, Dj. and Simic, Lj. and Vranjes, N. and Vranješ Milosavljević, Marija",
year = "2014",
url = "http://vinar.vin.bg.ac.rs/handle/123456789/5993",
abstract = "The process pp - GT W (+/-) J/psi provides a powerful probe of the production mechanism of charmonium in hadronic collisions, and is also sensitive to multiple parton interactions in the colliding protons. Using the 2011 ATLAS dataset of 4.5 fb(-1) of root s= 7 TeV pp collisions at the LHC, the first observation is made of the production of W (+/-) + prompt J/psi events in hadronic collisions, using W (+/-) - GT mu nu(mu) and J/psi - GT mu(+)mu(-) center dot A yield of W (+/-) + prompt J/psi events is observed, with a statistical significance of 5.1 sigma. The production rate as a ratio to the inclusive W (+/-) boson production rate is measured, and the double parton scattering contribution to the cross section is estimated.",
journal = "Journal of High Energy Physics",
title = "Measurement of the production cross section of prompt j/psi mesons in association with a W (+/-) boson in pp collisions root s=7 TeV with the ATLAS detector",
number = "4",
doi = "10.1007/JHEP04(2014)172"
}
5
30
56
38

Comprehensive measurements of t-channel single top-quark production cross sections at root S=7 TeV with the ATLAS detector

Aad, G.; Agatonović-Jovin, Tatjana; Ćirković, Predrag; Dimitrievska, A.; Krstić, Jelena; Mamužić, Judita; Marjanovic, M.; Popovic, D. S.; Sijacki, Dj.; Simic, Lj.; Vranjes, N.; Vranješ Milosavljević, Marija

(2014)

TY  - JOUR
AU  - Aad, G.
AU  - Agatonović-Jovin, Tatjana
AU  - Ćirković, Predrag
AU  - Dimitrievska, A.
AU  - Krstić, Jelena
AU  - Mamužić, Judita
AU  - Marjanovic, M.
AU  - Popovic, D. S.
AU  - Sijacki, Dj.
AU  - Simic, Lj.
AU  - Vranjes, N.
AU  - Vranješ Milosavljević, Marija
PY  - 2014
UR  - http://vinar.vin.bg.ac.rs/handle/123456789/293
AB  - This article presents measurements of the t-channel single top-quark ((t) over bart) and top-antiquark (_ t) total production cross sections sdtq_ and sd _ tq_, their ratio Rt sdtq_= sd _ tq_, and a measurement of the inclusive production cross section sdtq _ _ tq_ in proton-proton collisions at ffiffiffi ps = 7 TeV at the LHC. Differential cross sections for the tq and _ tq processes are measured as a function of the transverse momentum and the absolute value of the rapidity of t and _ t, respectively. The analyzed data set was recorded with the ATLAS detector and corresponds to an integrated luminosity of 4.59 fb-1. Selected events contain one charged lepton, large missing transverse momentum, and two or three jets. The cross sections are measured by performing a binned maximum-likelihood fit to the output distributions of neural networks. The resulting measurements are sdtq_ 46 = 1dstat_ = 6dsyst_ pb, sd _ tq_ = 23 +/- 1dstat_ = 3dsyst_ pb, Rt = 2.04 0.13dstat_ +/-=0.12dsyst_, and sdtq _ _ tq_ = 68 +/-= 2dstat_ = 8dsyst_ pb, consistent with the Standard Model expectation. The uncertainty on the measured cross sections is dominated by systematic uncertainties, while the uncertainty on Rt is mainly statistical. Using the ratio of sdtq _ _ tq_ to its theoretical prediction, and assuming that the top-quark-related CKM matrix elements obey the relation jVtbj = jVtsj; jVtdj, we determine jVtbj = 1.02 = 0.07.
T2  - Physical Review D
T1  - Comprehensive measurements of t-channel single top-quark production cross sections at root S=7 TeV with the ATLAS detector
VL  - 90
IS  - 11
DO  - 10.1103/PhysRevD.90.112006
ER  - 
@article{
author = "Aad, G. and Agatonović-Jovin, Tatjana and Ćirković, Predrag and Dimitrievska, A. and Krstić, Jelena and Mamužić, Judita and Marjanovic, M. and Popovic, D. S. and Sijacki, Dj. and Simic, Lj. and Vranjes, N. and Vranješ Milosavljević, Marija",
year = "2014",
url = "http://vinar.vin.bg.ac.rs/handle/123456789/293",
abstract = "This article presents measurements of the t-channel single top-quark ((t) over bart) and top-antiquark (_ t) total production cross sections sdtq_ and sd _ tq_, their ratio Rt sdtq_= sd _ tq_, and a measurement of the inclusive production cross section sdtq _ _ tq_ in proton-proton collisions at ffiffiffi ps = 7 TeV at the LHC. Differential cross sections for the tq and _ tq processes are measured as a function of the transverse momentum and the absolute value of the rapidity of t and _ t, respectively. The analyzed data set was recorded with the ATLAS detector and corresponds to an integrated luminosity of 4.59 fb-1. Selected events contain one charged lepton, large missing transverse momentum, and two or three jets. The cross sections are measured by performing a binned maximum-likelihood fit to the output distributions of neural networks. The resulting measurements are sdtq_ 46 = 1dstat_ = 6dsyst_ pb, sd _ tq_ = 23 +/- 1dstat_ = 3dsyst_ pb, Rt = 2.04 0.13dstat_ +/-=0.12dsyst_, and sdtq _ _ tq_ = 68 +/-= 2dstat_ = 8dsyst_ pb, consistent with the Standard Model expectation. The uncertainty on the measured cross sections is dominated by systematic uncertainties, while the uncertainty on Rt is mainly statistical. Using the ratio of sdtq _ _ tq_ to its theoretical prediction, and assuming that the top-quark-related CKM matrix elements obey the relation jVtbj = jVtsj; jVtdj, we determine jVtbj = 1.02 = 0.07.",
journal = "Physical Review D",
title = "Comprehensive measurements of t-channel single top-quark production cross sections at root S=7 TeV with the ATLAS detector",
volume = "90",
number = "11",
doi = "10.1103/PhysRevD.90.112006"
}
3
50
61
68

Search for new phenomena in final states with large jet multiplicities and missing transverse momentum at root s = 8 TeV proton-proton collisions using the ATLAS experiment (vol 10, pg 130, 2013)

Aad, G.; Agatonović-Jovin, Tatjana; Božović-Jelisavčić, Ivanka; Ćirković, Predrag; Krstić, Jelena; Mamužić, Judita; Popovic, D. S.; Sijacki, Dj.; Simic, Lj.; Vranjes, N.; Vranješ Milosavljević, Marija; Zivkovic, L.

(2014)

@misc{
author = "Aad, G. and Agatonović-Jovin, Tatjana and Božović-Jelisavčić, Ivanka and Ćirković, Predrag and Krstić, Jelena and Mamužić, Judita and Popovic, D. S. and Sijacki, Dj. and Simic, Lj. and Vranjes, N. and Vranješ Milosavljević, Marija and Zivkovic, L.",
year = "2014",
url = "http://vinar.vin.bg.ac.rs/handle/123456789/289",
journal = "Journal of High Energy Physics",
title = "Search for new phenomena in final states with large jet multiplicities and missing transverse momentum at root s = 8 TeV proton-proton collisions using the ATLAS experiment (vol 10, pg 130, 2013)",
number = "1",
doi = "10.1007/JHEP01(2014)109"
}
8
8
13

Flavor tagged time-dependent angular analysis of the B-s(0) - GT J/psi phi decay and extraction of Delta Gamma(s) and the weak phase phi(s) in ATLAS

Aad, G.; Agatonović-Jovin, Tatjana; Božović-Jelisavčić, Ivanka; Ćirković, Predrag; Dimitrievska, A.; Krstić, Jelena; Mamužić, Judita; Popovic, D. S.; Sijacki, Dj.; Simic, Lj.; Vranjes, N.; Vranješ Milosavljević, Marija

(2014)

TY  - JOUR
AU  - Aad, G.
AU  - Agatonović-Jovin, Tatjana
AU  - Božović-Jelisavčić, Ivanka
AU  - Ćirković, Predrag
AU  - Dimitrievska, A.
AU  - Krstić, Jelena
AU  - Mamužić, Judita
AU  - Popovic, D. S.
AU  - Sijacki, Dj.
AU  - Simic, Lj.
AU  - Vranjes, N.
AU  - Vranješ Milosavljević, Marija
PY  - 2014
UR  - http://vinar.vin.bg.ac.rs/handle/123456789/141
AB  - A measurement of the B-s(0) - GT J/psi phi decay parameters, updated to include flavor tagging is reported using 4.9 fb(-1) of integrated luminosity collected by the ATLAS detector from root s = 7 TeV pp collisions recorded in 2011 at the LHC. The values measured for the physical parameters are phi(s) = 0.12 +/- 0.25(stat) +/- 0.05(syst) rad Delta Gamma(s) = 0.053 +/- 0.021(stat) +/- 0.010(syst) ps(-1) Gamma(s) = 0.677 +/- 0.007(stat) +/- 0.004(syst) ps(-1) vertical bar A(parallel to)(0)vertical bar(2) = 0.220 +/- 0.008(stat) +/- 0.009(syst) vertical bar A(0)(0)vertical bar(2) = 0.529 +/- 0.006(stat) +/- 0.012(syst) delta(perpendicular to) = 3.89 +/- 0.47(stat) +/- 0.11(syst) rad where the parameter Delta Gamma(s) is constrained to be positive. The S-wave contribution was measured and found to be compatible with zero. Results for phi(s) and Delta Gamma(s) are also presented as 68% and 95% likelihood contours, which show agreement with the Standard Model expectations.
T2  - Physical Review D
T1  - Flavor tagged time-dependent angular analysis of the B-s(0) - GT J/psi phi decay and extraction of Delta Gamma(s) and the weak phase phi(s) in ATLAS
VL  - 90
IS  - 5
DO  - 10.1103/PhysRevD.90.052007
ER  - 
@article{
author = "Aad, G. and Agatonović-Jovin, Tatjana and Božović-Jelisavčić, Ivanka and Ćirković, Predrag and Dimitrievska, A. and Krstić, Jelena and Mamužić, Judita and Popovic, D. S. and Sijacki, Dj. and Simic, Lj. and Vranjes, N. and Vranješ Milosavljević, Marija",
year = "2014",
url = "http://vinar.vin.bg.ac.rs/handle/123456789/141",
abstract = "A measurement of the B-s(0) - GT J/psi phi decay parameters, updated to include flavor tagging is reported using 4.9 fb(-1) of integrated luminosity collected by the ATLAS detector from root s = 7 TeV pp collisions recorded in 2011 at the LHC. The values measured for the physical parameters are phi(s) = 0.12 +/- 0.25(stat) +/- 0.05(syst) rad Delta Gamma(s) = 0.053 +/- 0.021(stat) +/- 0.010(syst) ps(-1) Gamma(s) = 0.677 +/- 0.007(stat) +/- 0.004(syst) ps(-1) vertical bar A(parallel to)(0)vertical bar(2) = 0.220 +/- 0.008(stat) +/- 0.009(syst) vertical bar A(0)(0)vertical bar(2) = 0.529 +/- 0.006(stat) +/- 0.012(syst) delta(perpendicular to) = 3.89 +/- 0.47(stat) +/- 0.11(syst) rad where the parameter Delta Gamma(s) is constrained to be positive. The S-wave contribution was measured and found to be compatible with zero. Results for phi(s) and Delta Gamma(s) are also presented as 68% and 95% likelihood contours, which show agreement with the Standard Model expectations.",
journal = "Physical Review D",
title = "Flavor tagged time-dependent angular analysis of the B-s(0) - GT J/psi phi decay and extraction of Delta Gamma(s) and the weak phase phi(s) in ATLAS",
volume = "90",
number = "5",
doi = "10.1103/PhysRevD.90.052007"
}
1
21
13
38

A Particle Consistent with the Higgs Boson Observed with the ATLAS Detector at the Large Hadron Collider

Aad, G.; Borjanovic, I.; Božović-Jelisavčić, Ivanka; Ćirković, Predrag; Agatonović-Jovin, Tatjana; Krstić, Jelena; Mamužić, Judita; Popovic, D. S.; Sijacki, Dj.; Simic, Lj.; Vranjes, N.; Vranješ Milosavljević, Marija; Zivkovic, L.

(2012)

TY  - JOUR
AU  - Aad, G.
AU  - Borjanovic, I.
AU  - Božović-Jelisavčić, Ivanka
AU  - Ćirković, Predrag
AU  - Agatonović-Jovin, Tatjana
AU  - Krstić, Jelena
AU  - Mamužić, Judita
AU  - Popovic, D. S.
AU  - Sijacki, Dj.
AU  - Simic, Lj.
AU  - Vranjes, N.
AU  - Vranješ Milosavljević, Marija
AU  - Zivkovic, L.
PY  - 2012
UR  - http://vinar.vin.bg.ac.rs/handle/123456789/4362
AB  - Nearly 50 years ago, theoretical physicists proposed that a field permeates the universe and gives energy to the vacuum. This field was required to explain why some, but not all, fundamental particles have mass. Numerous precision measurements during recent decades have provided indirect support for the existence of this field, but one crucial prediction of this theory has remained unconfirmed despite 30 years of experimental searches: the existence of a massive particle, the standard model Higgs boson. The ATLAS experiment at the Large Hadron Collider at CERN has now observed the production of a new particle with a mass of 126 giga-electron volts and decay signatures consistent with those expected for the Higgs particle. This result is strong support for the standard model of particle physics, including the presence of this vacuum field. The existence and properties of the newly discovered particle may also have consequences beyond the standard model itself.
T2  - Science
T1  - A Particle Consistent with the Higgs Boson Observed with the ATLAS Detector at the Large Hadron Collider
VL  - 338
IS  - 6114
SP  - 1576
EP  - 1582
DO  - 10.1126/science.1232005
ER  - 
@article{
author = "Aad, G. and Borjanovic, I. and Božović-Jelisavčić, Ivanka and Ćirković, Predrag and Agatonović-Jovin, Tatjana and Krstić, Jelena and Mamužić, Judita and Popovic, D. S. and Sijacki, Dj. and Simic, Lj. and Vranjes, N. and Vranješ Milosavljević, Marija and Zivkovic, L.",
year = "2012",
url = "http://vinar.vin.bg.ac.rs/handle/123456789/4362",
abstract = "Nearly 50 years ago, theoretical physicists proposed that a field permeates the universe and gives energy to the vacuum. This field was required to explain why some, but not all, fundamental particles have mass. Numerous precision measurements during recent decades have provided indirect support for the existence of this field, but one crucial prediction of this theory has remained unconfirmed despite 30 years of experimental searches: the existence of a massive particle, the standard model Higgs boson. The ATLAS experiment at the Large Hadron Collider at CERN has now observed the production of a new particle with a mass of 126 giga-electron volts and decay signatures consistent with those expected for the Higgs particle. This result is strong support for the standard model of particle physics, including the presence of this vacuum field. The existence and properties of the newly discovered particle may also have consequences beyond the standard model itself.",
journal = "Science",
title = "A Particle Consistent with the Higgs Boson Observed with the ATLAS Detector at the Large Hadron Collider",
volume = "338",
number = "6114",
pages = "1576-1582",
doi = "10.1126/science.1232005"
}
46
55
71
70

Search for first generation scalar leptoquarks in pp collisions at root s = 7 TeV with the ATLAS detector (vol 709, pg 158, 2012)

Aad, G.; Borjanovic, I.; Božović-Jelisavčić, Ivanka; Agatonović-Jovin, Tatjana; Krstić, Jelena; Mamužić, Judita; Mudrinić, Mihajlo; Popovic, D. S.; Reljic, D.; Sijacki, Dj.; Simic, Lj.; Vranjes, N.; Vranješ Milosavljević, Marija; Zivkovic, L.

(2012)

@misc{
author = "Aad, G. and Borjanovic, I. and Božović-Jelisavčić, Ivanka and Agatonović-Jovin, Tatjana and Krstić, Jelena and Mamužić, Judita and Mudrinić, Mihajlo and Popovic, D. S. and Reljic, D. and Sijacki, Dj. and Simic, Lj. and Vranjes, N. and Vranješ Milosavljević, Marija and Zivkovic, L.",
year = "2012",
url = "http://vinar.vin.bg.ac.rs/handle/123456789/4855",
journal = "Physics Letters B",
title = "Search for first generation scalar leptoquarks in pp collisions at root s = 7 TeV with the ATLAS detector (vol 709, pg 158, 2012)",
volume = "711",
number = "5",
pages = "442-455",
doi = "10.1016/j.physletb.2012.03.023"
}
9
24
10

Search for the Higgs Boson in the H - GT WW - GT l nu jj Decay Channel in pp Collisions at root s=7 TeV with the ATLAS Detector

Aad, G.; Borjanovic, I.; Božović-Jelisavčić, Ivanka; Agatonović-Jovin, Tatjana; Krstić, Jelena; Mamužić, Judita; Mudrinić, Mihajlo; Popovic, D. S.; Reljic, D.; Sijacki, Dj.; Simic, Lj; Vranjes, N.; Vranješ Milosavljević, Marija; Zivkovic, L.

(2011)

TY  - JOUR
AU  - Aad, G.
AU  - Borjanovic, I.
AU  - Božović-Jelisavčić, Ivanka
AU  - Agatonović-Jovin, Tatjana
AU  - Krstić, Jelena
AU  - Mamužić, Judita
AU  - Mudrinić, Mihajlo
AU  - Popovic, D. S.
AU  - Reljic, D.
AU  - Sijacki, Dj.
AU  - Simic, Lj
AU  - Vranjes, N.
AU  - Vranješ Milosavljević, Marija
AU  - Zivkovic, L.
PY  - 2011
UR  - http://vinar.vin.bg.ac.rs/handle/123456789/4589
AB  - A search for a Higgs boson has been performed in the H - GT WW - GT l nu jj channel in 1.04 fb(-1) of pp collision data at root s = 7 TeV recorded with the ATLAS detector at the Large Hadron Collider. No significant excess of events is observed over the expected background and limits on the Higgs boson production cross section are derived for a Higgs boson mass in the range 240 GeV LT m(H) LT 600 GeV. The best sensitivity is reached for m(H) = 400 GeV, where the 95% confidence level upper bound on the cross section for H - GT WW production is 3.1 pb, or 2.7 times the standard model prediction.
T2  - Physical Review Letters
T1  - Search for the Higgs Boson in the H - GT WW - GT l nu jj Decay Channel in pp Collisions at root s=7 TeV with the ATLAS Detector
VL  - 107
IS  - 23
DO  - 10.1103/PhysRevLett.107.231801
ER  - 
@article{
author = "Aad, G. and Borjanovic, I. and Božović-Jelisavčić, Ivanka and Agatonović-Jovin, Tatjana and Krstić, Jelena and Mamužić, Judita and Mudrinić, Mihajlo and Popovic, D. S. and Reljic, D. and Sijacki, Dj. and Simic, Lj and Vranjes, N. and Vranješ Milosavljević, Marija and Zivkovic, L.",
year = "2011",
url = "http://vinar.vin.bg.ac.rs/handle/123456789/4589",
abstract = "A search for a Higgs boson has been performed in the H - GT WW - GT l nu jj channel in 1.04 fb(-1) of pp collision data at root s = 7 TeV recorded with the ATLAS detector at the Large Hadron Collider. No significant excess of events is observed over the expected background and limits on the Higgs boson production cross section are derived for a Higgs boson mass in the range 240 GeV LT m(H) LT 600 GeV. The best sensitivity is reached for m(H) = 400 GeV, where the 95% confidence level upper bound on the cross section for H - GT WW production is 3.1 pb, or 2.7 times the standard model prediction.",
journal = "Physical Review Letters",
title = "Search for the Higgs Boson in the H - GT WW - GT l nu jj Decay Channel in pp Collisions at root s=7 TeV with the ATLAS Detector",
volume = "107",
number = "23",
doi = "10.1103/PhysRevLett.107.231801"
}
4
23
23
23